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Replication of MAPT and SNCA, but not PARK16‐18, as susceptibility genes for Parkinson's disease

Identifieur interne : 001236 ( Main/Corpus ); précédent : 001235; suivant : 001237

Replication of MAPT and SNCA, but not PARK16‐18, as susceptibility genes for Parkinson's disease

Auteurs : Ignacio F. Mata ; Dora Yearout ; Victoria Alvarez ; Eliecer Coto ; Lorena De Mena ; Renee Ribacoba ; Oswaldo Lorenzo-Betancor ; Lluis Samaranch ; Pau Pastor ; Sebastian Cervantes ; Jon Infante ; Ines Garcia-Gorostiaga ; Maria Sierra ; Onofre Combarros ; Katherine W. Snapinn ; Karen L. Edwards ; Cyrus P. Zabetian

Source :

RBID : ISTEX:3EDAAD1E5294BC906AF057DB352374C4B76D4FE8

English descriptors

Abstract

Recent genome‐wide association studies of Parkinson's disease have nominated 3 new susceptibility loci (PARK16‐18) and confirmed 2 known risk genes (MAPT and SNCA) in populations of European ancestry. We sought to replicate these findings. We genotyped single‐nucleotide polymorphisms in each of these genes/loci in 1445 Parkinson's disease patients and 1161 controls from northern Spain. Logistic regression was used to test for association between genotype and Parkinson's disease under an additive model, adjusting for sex, age, and site. We also performed analyses stratified by age at onset. Single‐nucleotide polymorphisms in MAPT (rs1800547; P = 3.1 × 10−4) and SNCA (rs356219; P = 5.5 × 10−4) were significantly associated with Parkinson's disease. However, none of the markers in PARK16‐18 associated with Parkinson's disease in the overall sample, or in any age stratum, with P values ranging from .09 to .88. Although our data further validate MAPT and SNCA as Parkinson's disease susceptibility genes, we failed to replicate PARK16, PARK17, and PARK18. Potential reasons for the discordance between our study and previous genome‐wide association studies include effects of population structure, power, and population‐specific environmental interactions. Our findings suggest that additional studies of PARK16‐18 are necessary to establish the role of these loci in modifying risk for Parkinson's disease in European‐derived populations. © 2011 Movement Disorder Society

Url:
DOI: 10.1002/mds.23642

Links to Exploration step

ISTEX:3EDAAD1E5294BC906AF057DB352374C4B76D4FE8

Le document en format XML

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<div type="abstract" xml:lang="en">Recent genome‐wide association studies of Parkinson's disease have nominated 3 new susceptibility loci (PARK16‐18) and confirmed 2 known risk genes (MAPT and SNCA) in populations of European ancestry. We sought to replicate these findings. We genotyped single‐nucleotide polymorphisms in each of these genes/loci in 1445 Parkinson's disease patients and 1161 controls from northern Spain. Logistic regression was used to test for association between genotype and Parkinson's disease under an additive model, adjusting for sex, age, and site. We also performed analyses stratified by age at onset. Single‐nucleotide polymorphisms in MAPT (rs1800547; P = 3.1 × 10−4) and SNCA (rs356219; P = 5.5 × 10−4) were significantly associated with Parkinson's disease. However, none of the markers in PARK16‐18 associated with Parkinson's disease in the overall sample, or in any age stratum, with P values ranging from .09 to .88. Although our data further validate MAPT and SNCA as Parkinson's disease susceptibility genes, we failed to replicate PARK16, PARK17, and PARK18. Potential reasons for the discordance between our study and previous genome‐wide association studies include effects of population structure, power, and population‐specific environmental interactions. Our findings suggest that additional studies of PARK16‐18 are necessary to establish the role of these loci in modifying risk for Parkinson's disease in European‐derived populations. © 2011 Movement Disorder Society</div>
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<name>Ignacio F. Mata PhD</name>
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<name>Jon Infante MD</name>
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<name>Maria Sierra MD</name>
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<affiliation xml:id="af7" countryCode="ES" type="organization">
<unparsedAffiliation>CIBERNED, Centro de Investigación Biomédica en Red de Enfermedades Neurodegenerativas, Instituto de Salud Carlos III, Spain</unparsedAffiliation>
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<unparsedAffiliation>Department of Neurology and Centro de Investigacion Biomedica en Red sobre Enfermedades Neurodegenerativas (CIBERNED), “Marques de Valdecilla” University Hospital, Santander, Spain</unparsedAffiliation>
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<unparsedAffiliation>Neurology Service, Hospital de Galdakao, Vizcaya, Spain</unparsedAffiliation>
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<unparsedAffiliation>Department of Epidemiology, University of Washington, Seattle, Washington, USA</unparsedAffiliation>
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<keyword xml:id="kwd1">Parkinson's disease</keyword>
<keyword xml:id="kwd2">genome‐wide</keyword>
<keyword xml:id="kwd3">replication</keyword>
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<p> Additional Supporting Information may be found in the online version of this article. </p>
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<caption>Author Roles and Disclosures</caption>
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<title type="main">Abstract</title>
<p>Recent genome‐wide association studies of Parkinson's disease have nominated 3 new susceptibility loci (
<i>PARK16</i>
<i>18</i>
) and confirmed 2 known risk genes (
<i>MAPT</i>
and
<i>SNCA</i>
) in populations of European ancestry. We sought to replicate these findings. We genotyped single‐nucleotide polymorphisms in each of these genes/loci in 1445 Parkinson's disease patients and 1161 controls from northern Spain. Logistic regression was used to test for association between genotype and Parkinson's disease under an additive model, adjusting for sex, age, and site. We also performed analyses stratified by age at onset. Single‐nucleotide polymorphisms in
<i>MAPT</i>
(rs1800547;
<i>P</i>
= 3.1 × 10
<sup>−4</sup>
) and
<i>SNCA</i>
(rs356219;
<i>P</i>
= 5.5 × 10
<sup>−4</sup>
) were significantly associated with Parkinson's disease. However, none of the markers in
<i>PARK16‐18</i>
associated with Parkinson's disease in the overall sample, or in any age stratum, with
<i>P</i>
values ranging from .09 to .88. Although our data further validate
<i>MAPT</i>
and
<i>SNCA</i>
as Parkinson's disease susceptibility genes, we failed to replicate
<i>PARK16</i>
,
<i>PARK17</i>
, and
<i>PARK18</i>
. Potential reasons for the discordance between our study and previous genome‐wide association studies include effects of population structure, power, and population‐specific environmental interactions. Our findings suggest that additional studies of
<i>PARK16‐18</i>
are necessary to establish the role of these loci in modifying risk for Parkinson's disease in European‐derived populations. © 2011 Movement Disorder Society</p>
</abstract>
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<p>
<b>Relevant conflict of interest/financial disclosures:</b>
Nothing to report.</p>
<p>This work was supported by funding from the Department of Veterans Affairs (1I01BX000531), National Institutes of Health (P50 NS062684 and R01 NS065070), Spanish Ministry of Education and Science (SAF2006‐10126: 2006‐2009), Fondo de Investigacion Sanitaria (FIS, PI070014), Spanish Ministry of Science and Technology, European Social Fund, and the Asociación Parkinson Asturias.</p>
<p>Full financial disclosures and author roles may be found in the online version of this article.</p>
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<title>SNCA, MAPT, PARK16‐18 IN PD Susceptibility</title>
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<namePart type="given">Ignacio F.</namePart>
<namePart type="family">Mata</namePart>
<namePart type="termsOfAddress">PhD</namePart>
<affiliation>Veterans Affairs Puget Sound Health Care System, Seattle, Washington, USA</affiliation>
<affiliation>Department of Neurology, University of Washington School of Medicine, Seattle, Washington, USA</affiliation>
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<namePart type="given">Dora</namePart>
<namePart type="family">Yearout</namePart>
<namePart type="termsOfAddress">BS</namePart>
<affiliation>Veterans Affairs Puget Sound Health Care System, Seattle, Washington, USA</affiliation>
<affiliation>Department of Neurology, University of Washington School of Medicine, Seattle, Washington, USA</affiliation>
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<namePart type="given">Victoria</namePart>
<namePart type="family">Alvarez</namePart>
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<affiliation>Laboratorio de Genetica Molecular, Instituto de Investigacion Nefrologica (IRSINFRIAT), Hospital Universitario Central de Asturias, Oviedo, Spain</affiliation>
<role>
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<namePart type="given">Eliecer</namePart>
<namePart type="family">Coto</namePart>
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<affiliation>Laboratorio de Genetica Molecular, Instituto de Investigacion Nefrologica (IRSINFRIAT), Hospital Universitario Central de Asturias, Oviedo, Spain</affiliation>
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<roleTerm type="text">author</roleTerm>
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<name type="personal">
<namePart type="given">Lorena</namePart>
<namePart type="family">de Mena</namePart>
<namePart type="termsOfAddress">BS</namePart>
<affiliation>Laboratorio de Genetica Molecular, Instituto de Investigacion Nefrologica (IRSINFRIAT), Hospital Universitario Central de Asturias, Oviedo, Spain</affiliation>
<role>
<roleTerm type="text">author</roleTerm>
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<name type="personal">
<namePart type="given">Renee</namePart>
<namePart type="family">Ribacoba</namePart>
<namePart type="termsOfAddress">MD</namePart>
<affiliation>Neurology Department, Hospital Alvarez‐Buylla, Mieres, Spain</affiliation>
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<roleTerm type="text">author</roleTerm>
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<name type="personal">
<namePart type="given">Oswaldo</namePart>
<namePart type="family">Lorenzo‐Betancor</namePart>
<namePart type="termsOfAddress">MD</namePart>
<affiliation>Neurogenetics Laboratory, Division of Neurosciences, Center for Applied Medical Research, University of Navarra, Pamplona, Spain</affiliation>
<affiliation>Department of Neurology, Clínica Universidad de Navarra, University of Navarra School of Medicine, Pamplona, Spain</affiliation>
<role>
<roleTerm type="text">author</roleTerm>
</role>
</name>
<name type="personal">
<namePart type="given">Lluis</namePart>
<namePart type="family">Samaranch</namePart>
<namePart type="termsOfAddress">PhD</namePart>
<affiliation>Neurogenetics Laboratory, Division of Neurosciences, Center for Applied Medical Research, University of Navarra, Pamplona, Spain</affiliation>
<role>
<roleTerm type="text">author</roleTerm>
</role>
</name>
<name type="personal">
<namePart type="given">Pau</namePart>
<namePart type="family">Pastor</namePart>
<namePart type="termsOfAddress">MD, PhD</namePart>
<affiliation>Neurogenetics Laboratory, Division of Neurosciences, Center for Applied Medical Research, University of Navarra, Pamplona, Spain</affiliation>
<affiliation>Department of Neurology, Clínica Universidad de Navarra, University of Navarra School of Medicine, Pamplona, Spain</affiliation>
<affiliation>CIBERNED, Centro de Investigación Biomédica en Red de Enfermedades Neurodegenerativas, Instituto de Salud Carlos III, Spain</affiliation>
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<roleTerm type="text">author</roleTerm>
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<name type="personal">
<namePart type="given">Sebastian</namePart>
<namePart type="family">Cervantes</namePart>
<namePart type="termsOfAddress">MD</namePart>
<affiliation>Neurogenetics Laboratory, Division of Neurosciences, Center for Applied Medical Research, University of Navarra, Pamplona, Spain</affiliation>
<affiliation>Department of Neurology, Clínica Universidad de Navarra, University of Navarra School of Medicine, Pamplona, Spain</affiliation>
<role>
<roleTerm type="text">author</roleTerm>
</role>
</name>
<name type="personal">
<namePart type="given">Jon</namePart>
<namePart type="family">Infante</namePart>
<namePart type="termsOfAddress">MD</namePart>
<affiliation>Department of Neurology and Centro de Investigacion Biomedica en Red sobre Enfermedades Neurodegenerativas (CIBERNED), “Marques de Valdecilla” University Hospital, Santander, Spain</affiliation>
<role>
<roleTerm type="text">author</roleTerm>
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<namePart type="given">Ines</namePart>
<namePart type="family">Garcia‐Gorostiaga</namePart>
<namePart type="termsOfAddress">MD</namePart>
<affiliation>Neurology Service, Hospital de Galdakao, Vizcaya, Spain</affiliation>
<role>
<roleTerm type="text">author</roleTerm>
</role>
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<name type="personal">
<namePart type="given">Maria</namePart>
<namePart type="family">Sierra</namePart>
<namePart type="termsOfAddress">MD</namePart>
<affiliation>Department of Neurology and Centro de Investigacion Biomedica en Red sobre Enfermedades Neurodegenerativas (CIBERNED), “Marques de Valdecilla” University Hospital, Santander, Spain</affiliation>
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<roleTerm type="text">author</roleTerm>
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<name type="personal">
<namePart type="given">Onofre</namePart>
<namePart type="family">Combarros</namePart>
<namePart type="termsOfAddress">MD</namePart>
<affiliation>Department of Neurology and Centro de Investigacion Biomedica en Red sobre Enfermedades Neurodegenerativas (CIBERNED), “Marques de Valdecilla” University Hospital, Santander, Spain</affiliation>
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<namePart type="termsOfAddress">MS</namePart>
<affiliation>Department of Epidemiology, University of Washington, Seattle, Washington, USA</affiliation>
<role>
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<name type="personal">
<namePart type="given">Karen L.</namePart>
<namePart type="family">Edwards</namePart>
<namePart type="termsOfAddress">PhD</namePart>
<affiliation>Department of Epidemiology, University of Washington, Seattle, Washington, USA</affiliation>
<role>
<roleTerm type="text">author</roleTerm>
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<name type="personal">
<namePart type="given">Cyrus P.</namePart>
<namePart type="family">Zabetian</namePart>
<namePart type="termsOfAddress">MD, MS</namePart>
<affiliation>Veterans Affairs Puget Sound Health Care System, Seattle, Washington, USA</affiliation>
<affiliation>Department of Neurology, University of Washington School of Medicine, Seattle, Washington, USA</affiliation>
<description>Correspondence: Geriatric Research Education and Clinical Center S‐182, VA Puget Sound Health Care System, 1660 South Columbian Way, Seattle, WA 98108, USA</description>
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<abstract lang="en">Recent genome‐wide association studies of Parkinson's disease have nominated 3 new susceptibility loci (PARK16‐18) and confirmed 2 known risk genes (MAPT and SNCA) in populations of European ancestry. We sought to replicate these findings. We genotyped single‐nucleotide polymorphisms in each of these genes/loci in 1445 Parkinson's disease patients and 1161 controls from northern Spain. Logistic regression was used to test for association between genotype and Parkinson's disease under an additive model, adjusting for sex, age, and site. We also performed analyses stratified by age at onset. Single‐nucleotide polymorphisms in MAPT (rs1800547; P = 3.1 × 10−4) and SNCA (rs356219; P = 5.5 × 10−4) were significantly associated with Parkinson's disease. However, none of the markers in PARK16‐18 associated with Parkinson's disease in the overall sample, or in any age stratum, with P values ranging from .09 to .88. Although our data further validate MAPT and SNCA as Parkinson's disease susceptibility genes, we failed to replicate PARK16, PARK17, and PARK18. Potential reasons for the discordance between our study and previous genome‐wide association studies include effects of population structure, power, and population‐specific environmental interactions. Our findings suggest that additional studies of PARK16‐18 are necessary to establish the role of these loci in modifying risk for Parkinson's disease in European‐derived populations. © 2011 Movement Disorder Society</abstract>
<note type="content">*Relevant conflict of interest/financial disclosures: Nothing to report. This work was supported by funding from the Department of Veterans Affairs (1I01BX000531), National Institutes of Health (P50 NS062684 and R01 NS065070), Spanish Ministry of Education and Science (SAF2006‐10126: 2006‐2009), Fondo de Investigacion Sanitaria (FIS, PI070014), Spanish Ministry of Science and Technology, European Social Fund, and the Asociación Parkinson Asturias. Full financial disclosures and author roles may be found in the online version of this article.</note>
<subject lang="en">
<genre>Keywords</genre>
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<topic>genome‐wide</topic>
<topic>replication</topic>
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<title>Movement Disorders</title>
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<note type="content"> Additional Supporting Information may be found in the online version of this article.Supporting Info Item: Supporting Table 1 - Author Roles and Disclosures - </note>
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<identifier type="ISSN">0885-3185</identifier>
<identifier type="eISSN">1531-8257</identifier>
<identifier type="DOI">10.1002/(ISSN)1531-8257</identifier>
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<date>2011</date>
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<number>26</number>
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